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EPySeg: a coding-free solution for automated segmentation of epithelia using deep learning

Benoit Aigouy, from the Prud’homme team, developed EPySeg, an open-source software that uses deep learning to segment membrane-stained epithelial tissues, from any organism, automatically and very efficiently.
Picture of Delphine Dauga
Delphine Dauga
Biocurator at Bioself
Date de publication

Benoit Aigouy, from the Prud’homme team, developed EPySeg, an open-source software that uses deep learning to segment membrane-stained epithelial tissues, from any organism, automatically and very efficiently. EPyseg, which can be used on a local computer, or in the cloud via Google Colab, will accelerate and improve the characterization of epithelial tissues for all developmental biologists interested in tissue-scale morphogenesis.

EPyseg illustration

To know more :

Development 2020 Dec 2;dev.194589. doi: 10.1242/dev.194589.

Contact

Benoit Aigouy – Benoit Aigouy
Benjamin Prud’homme – Benjamin.prudhomme@univ-amu.fr

 

Delphine Dauga

Biocurator at Bioself

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